Wachten laboratory
Image analysis
Project details
We generate open-source software tools as plug-ins in ImageJ to facilitate image analysis.
This project is headed by Jan Niklas Hansen.
https://github.com/hansenjn/CiliaQ
https://github.com/hansenjn/SpermQ
https://github.com/hansenjn/MultifocalImaging-AnalysisToolbox
Project-related publications
CiliaQ: a simple, open-source software for automated quantification of ciliary morphology and fluorescence in 2D, 3D, and 4D images
Eur Phys J E Soft Matter. 2021 Mar 8;44(2):18. doi: 10.1140/epje/s10189-021-00031-y.
SpermQ⁻A Simple Analysis Software to Comprehensively Study Flagellar Beating and Sperm Steering
Cells. 2018 Dec 26;8(1):10. doi: 10.3390/cells8010010.
Multifocal imaging for precise, label-free tracking of fast biological processes in 3D
Nat Commun. 2021 Jul 28;12(1):4574. doi: 10.1038/s41467-021-24768-4
Project-related funding
SPP 1726
DFG
Boehringer Ingelheim Fonds
Boehringer Ingelheim Fonds
Project-related scientists
Jan Niklas Hansen
Dagmar Wachten Lab
Birthe Stüven
Dagmar Wachten Lab
Fatemeh Derakhshandeh
